PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.A00908.2.p
Common NameEUGRSUZ_A00908, LOC104433653
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 849aa    MW: 97155.5 Da    PI: 7.1653
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.A00908.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.48.6e-2789191191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                       +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+             +++  +ra  +t+Cka+++vk+++dgkw+++++
  Eucgr.A00908.2.p  89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSfnrprarqskqdPDNATGRRACAKTDCKASMHVKRRSDGKWVIHTF 181
                       5******************************************9999999998776655444555999************************* PP

              FAR1  82 eleHnHelap 91 
                       ++eHnHel p
  Eucgr.A00908.2.p 182 VKEHNHELLP 191
                       *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2489191IPR004330FAR1 DNA binding domain
PfamPF105517.2E-29289380IPR018289MULE transposase domain
PROSITE profilePS509669.582569605IPR007527Zinc finger, SWIM-type
PfamPF044346.4E-6577604IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-9580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010218Biological Processresponse to far red light
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MDIDLRLPSG GHEKEEEEPH GIDNMLDGDE KLHNGDMVTT TLADLGDVSH ASDGGALNPP  60
TADMMEVKEY MNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKR EYEKSFNRPR ARQSKQDPDN ATGRRACAKT DCKASMHVKR RSDGKWVIHT  180
FVKEHNHELL PAQAISEQTR KMYAAMARQF AEYKNVVGLK NDTRNPFEKG RNILLEGGDA  240
RILLEFFSQM QCSNSNFFHA VDLADDQRIR SLLWVDAKSR HDYSSFSDVI SFDTTYIRSK  300
YKMPLALFVG VNQHYQFMLL GCALLSDESA ATYSWLMQTW LKAVGGQHPK VIITDQDKTV  360
KTVISDVFHS SRHCFCLWQI WGKLSENLSH VIKRHDNFMA KFEKCVNRSW TEAEFEKRWW  420
KIINRCELRE DEWMHSLYED RRHWVPTFLK DAFFAGMCSI QRADSVNAFF DKYVHKKTTV  480
QEFVKMYEAI LQDRYEEEGK GESDTWSKQP LLKSPSPFEK SVSASYTHAV LKKFQVEVLG  540
AVACRPKEER QDETGTIFRV QDFEKDQDFT VTWNEMKSEI SCICRLFEYK GYLCRHALIV  600
LQMCGLSAIP SFYVLKRWTK DAKNRLLMTE ESEQVQSRVQ RYNDLCQRAM RLSEEGSLSQ  660
EAYSLASRAI EEAFGNCVGQ NTISKGLAEA GTSATHSLLC AEDDSQVRGM SKTNKKKNPT  720
KKRKVTSEPD IMTIGAQESL QQMEKLTPRA VTTLDSYYGT QQSVPGMVQL NLMAPTRDNY  780
YGSQQTIQGL GQLNSIAPSH DGYYTPQQSM HGLGQMDFFR SPGGFTYSIR DDSNVRAAQL  840
HEDASRHA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00078ChIP-seqTransfer from AT3G22170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.A00908.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044783.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
RefseqXP_010044788.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
SwissprotQ9LIE50.0FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A059DDJ60.0A0A059DDJ6_EUCGR; Uncharacterized protein
STRINGVIT_03s0017g01780.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3